PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID TRIUR3_25750-P1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family ARF
Protein Properties Length: 1104aa    MW: 123970 Da    PI: 6.9222
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
TRIUR3_25750-P1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.16.7e-23184285199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++ ++W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   ++
  TRIUR3_25750-P1 184 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIQARDLHDNVWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVIFV--RD 273
                      99*****************************954.4444.48************************************************..45 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++++l+++++r+
  TRIUR3_25750-P1 274 ERQQLLLGIRRA 285
                      77788***9997 PP

2Auxin_resp117.88.9e-39310393183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+++s+F+++YnPras++eFv++++k++ka++ +++s+GmRf+m+fete+  +rr++Gt++g++dldpvrW+nS+Wr+L+
  TRIUR3_25750-P1 310 AAHAAANNSPFTIFYNPRASPTEFVIPFAKYQKAVYgNQLSLGMRFRMMFETEELGTRRYMGTITGINDLDPVRWKNSQWRNLQ 393
                      79**********************************9*********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-42173313IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-41176299IPR015300DNA-binding pseudobarrel domain
CDDcd100171.07E-19183275No hitNo description
SMARTSM010197.4E-23184286IPR003340B3 DNA binding domain
PfamPF023627.2E-21184285IPR003340B3 DNA binding domain
PROSITE profilePS5086311.899184286IPR003340B3 DNA binding domain
PfamPF065072.2E-33310393IPR010525Auxin response factor
PROSITE profilePS5174527.1669701054IPR000270PB1 domain
SuperFamilySSF542772.84E-79851049No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 1104 aa     Download sequence    Send to blast
MGFRYVFSGL SAGEKKAPAI NSDLWHACAG PLVQLPPAGS LVVYFPQGHS EQLVGWLLPA  60
LWFALFATDF KLVAKVVGED WGLPAPLFYG LLVAASMQKD VDAHVPNYPN LPSKLICLLH  120
NITLHADLET DEVYAQMTLQ PVTSVYANRV ICILFGLDYD QYGKEALQLS ELALKQARPQ  180
NEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFSMQPP AQEIQARDLH DNVWTFRHIY  240
RGQPKRHLLT TGWSLFVSGK RLFAGDSVIF VRDERQQLLL GIRRANRQPT NISSSVLSSD  300
SMHIGILAAA AHAAANNSPF TIFYNPRASP TEFVIPFAKY QKAVYGNQLS LGMRFRMMFE  360
TEELGTRRYM GTITGINDLD PVRWKNSQWR NLQVGWDESA AGERRNRVSI WEIEPVAAPF  420
FICPPPFFGA KRPRQLDDES SEMENLLKRA MPWLGEEICI KDPQTQNTIM PGLSLVQWMN  480
MNMQQSSSFA NTAMQSEYLR SITNPSMQNI GSGDLSRQLC LQNQLLQQNN MQFNTPKLPQ  540
QMQPNNELSK AALPLNQNGA SIKPEEQTQD TSNFQRQQQS MNYTLPLSQA QTSLAQAQVL  600
IQSQMQQQQQ QQQQQPHISQ NQLPAASQPL LSHQQQQHHH QQHQHQQQEQ QHQQQQQQKF  660
LQQQQLLLQQ QQLQQHQHQL QQQQQQQLGK MPAQLPNLSN QQLQLSDQQL QLQLLQKLQQ  720
QQQSLLSQPG VTLAQLPLIQ EQQKLLMDMQ QQLSSSHSLS QQQMMPQQST KIPSQAASLP  780
PPMQPDTTHQ KLPQKQALPA DTLEAAIPTT TSHKFSSANG SPLRMPGATH SVVTEEIPSC  840
STSPSTANGN HLLQPVPGRD QYSSMINTEK APHSTAPMSV PSSLDAVTGA QRMTKELPKL  900
NSNYENHIST DIDNNYRIPK DAQQEISSSM VSQSFGASDM AFNSIDSGIN DGAFLNKSSW  960
PPAPPVKRMR TFTKVYKRGA VGRSIDISQY AGYEELKHAL ARMFSIEGQL EERQRIGWKL  1020
VYRDHEDDIL LLGDDPWEEF VNCVKCIRIL SPQEVQQMSL DGDLGSSVVP NQACSSSEGG  1080
GNAWRARCDQ NSGNPSTGSY DQFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1581241444388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that binds specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). {ECO:0000256|RuleBase:RU004561}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3674960.0AK367496.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2058D09.
GenBankAK3697130.0AK369713.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2096H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008645044.10.0PREDICTED: auxin response factor 19-like isoform X1
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLM8APQ00.0M8APQ0_TRIUA; Auxin response factor
STRINGORGLA06G0221800.10.0(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP140935106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19